Open Access

Knockdown of microRNA‑143‑5p by STTM technology affects eumelanin and pheomelanin production in melanocytes

  • Authors:
    • Shuhui Qi
    • Bo Liu
    • Junzhen Zhang
    • Xuexian Liu
    • Changsheng Dong
    • Ruiwen Fan
  • View Affiliations

  • Published online on: July 12, 2019     https://doi.org/10.3892/mmr.2019.10492
  • Pages: 2649-2656
  • Copyright: © Qi et al. This is an open access article distributed under the terms of Creative Commons Attribution License.

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Abstract

MicroRNAs (miRNAs) serve various roles in the regulation of melanogenesis in mammalian melanocytes that contribute to the development of hair color. The manipulation of the melanocyte action is a new target for genetic improvement. Short tandem target mimic (STTM) is a potent approach for silencing miRNAs in plants and animals. To investigate the function of miR‑143‑5p in melanogenesis, STTM was used to block the expression of miR‑143‑5p (STTM‑miR‑143‑5p). The molecular analysis and luciferase reporter assay identified myosin Va gene (MYO5A) as one of the miR‑143‑5p targets. STTM‑miR‑143‑5p overexpression resulted in an increased expression of downstream melanogenesis genes including microphthalmia‑associated transcription factor (MITF), tyrosinase family members [tyrosinase (TYR) and tyrosinase‑related protein 1 (TYRP1)], melanophilin (MLPH), and Rab27a, thereby contributing to melanocyte pigmentation by promoting total alkali‑soluble melanogenesis (ASM) and eumelanin (EM) contents; conversely, STTM‑miR‑143‑5p overexpression resulted in decreased expression of the tyrosinase‑related protein 2 (TYRP2)/dopachrome tautomerase (DCT), which is responsible for decreased pheomelanin (PM) content in mouse melanocytes. The results indicated that melanin production in melanocytes could be increased by manipulating miR‑143‑5p expression using STTM which resulted in ASM and EM production.

Introduction

The phenotype of hair color depends on the levels and ratio of two types of melanin, namely black-brown eumelanin (EM) and yellow-red-brown pheomelanin (PM), which are produced by resident skin melanocytes (1). The hair color formation includes melanin production in melanocytes and melanin transport to keratinocytes (2). Several genes and miRNAs are involved in the pathways of melanin production. microphthalmia-associated transcription factor (MITF) is an important transcription factor that activates the key limiting enzymes tyrosinase (TYR), tyrosinase-related protein 1 (TYRP1), and tyrosinase-related protein 2 (TYRP2)/DCT for the synthesis and storage of melanin in melanosomes (3,4). During melanin transportation, the tripartite complex Rab27a/melanophilin (MLPH)/myosin Va (MYO5A) plays a crucial role (5) and acts as a linker in the entire protein complex (6,7). The complex is required for connecting the melanosome to the actin cytoskeleton in order to facilitate the normal accumulation of the organelle in the dendritic tips (8). MYO5A is an actin-based molecular motor typically involved in the transport of organelles and vesicles, such as the melanosomes (9,10). MYO5A can bind to more than one type of cellular structure and its selectivity is determined by alternate spliced sequences in melanocytes (11).

Short tandem target mimics (STTMs) are based on target mimicry (TM) and aim to block the function of small RNA molecules in animals and plants (12). The expression of the microRNA-143 (miR-143) cluster is required in various types of cells. As predicted by the TargetScan analysis, miR-143-5p targets MYO5A. In the present study, the STTM method was used, which is considered a powerful technology to complement existing small RNA sequestration (12). An STTM-miR-143-5p plasmid was constructed to inhibit the function of miR-143-5p in the regulation of EM and PM production in mouse melanocytes.

Materials and methods

Construction of plasmids

An oligonucleotide containing the STTM-miR-143-5p sequence was chemically synthesized according to a previously described method (12). The oligonucleotide was inserted into the dual-luciferase vector, pmirGLO (Promega Corporation) in order to construct the expression plasmid pmirGLO-STTM-miR-143-5p, in which the CMV promoter was used to induce GFP and STTM-miR-143-5p expression. The null pmirGLO vector was used as the corresponding negative control (NC). The luciferase reporter expression plasmid was constructed by cloning the 3′-UTR sequence of the mouse MYO5A into the dual luciferase pmirGLO vector (Promega Corporation). The partial sequence of the mouse MYO5A containing the miR-143-5p binding sites was obtained by PCR with mouse melanocyte cDNA as the template and the primers that contained the XhoI and SacI sites (Table I). The PCR product was subsequently digested with XhoI and SacI and cloned into the SacI and XhoI restriction sites of the vector in order to produce the pmirGLO-MYO5A-wt plasmid. In addition, the MYO5A 3′-UTR with the miR-143-5p binding sites was mutated using a site-directed gene mutagenesis kit (Beyotime Institute of Technology) to generate the pmiGLO-MYO5A-mut plasmid. All constructs were verified by sequencing (Shenzhen Huada Gene Co., Ltd.).

Table I.

Primers used in the present study.

Table I.

Primers used in the present study.

Primer namePrimer sequence 5′-3′Application
MYO5A-F AAAATGCTGCGGTTAGGART-qPCR
MYO5A-R GCTTGGGAGGTATTGTGCRT-qPCR
MYO5A-wt-F CGAGCTCAAAATGCTGCGGTTAGGLuciferase reporter-wt
MYO5A-wt-R CCGCTCGAGCCAGTTAAAGAGTTTTGCATAGLuciferase reporter-wt
MYO5A-mut-F TACCTGCAGATGCACCTCTGCAAGTAGCAGACACTGGLuciferase reporter-mut
MYO5A-mut-R CCAGTGTCTGCTACTTGCAGAGGTGCATCTGCAGGTALuciferase reporter-mut
miR-143-5p-RT CTCAACTGGTGTCGTGGAGTCGGCAATTCAGTTGAGACCAGAGART-qPCR
miR-143-5p-F ACACTCCAGCTGGGGGTGCAGTGCTGCATCRT-qPCR
Common-R CGAGCAGTGCAGGGTCCGAGGTRT-qPCR
U6-RT GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACTCATCTRT-qPCR
U6-F CTCGCTTCGGCAGCACART-qPCR
MLPH-F GGTTTCCTGCTTCTGTTCGRT-qPCR
MLPH-R CGTGGCTTATGTTTGTCCCRT-qPCR
Rab27a-F TATGGGTTTCCTGCTTCTRT-qPCR
Rab27a-R GCCTCCTCCTCTTTCACTRT-qPCR
MITF-F TGAGGAGCAGAGCAGGGCAGAGAGTRT-qPCR
MITF-R TGGGAAGGTTGGCTGGACAGGAGTTRT-qPCR
TYR-F TGAAAATCCTAACTTACTCAGCCCART-qPCR
TYR-R TCAAACTCAGACAAAATTCCACATCRT-qPCR
TYRP1-F CCATTGCTGTAGTGGCTGCGTTGTTRT-qPCR
TYRP1-R GGAGAGGCTGGTTGGCTTCATTCTTRT-qPCR
TYRP2-F TTGCTCTTGGGGTTGCTGGCTTTTCRT-qPCR
TYRP2-R TCCTCCGTGTATCTCTTGCTGCTGART-qPCR
β-actin-F TTGCTGACAGGATGCAGAAGRT-qPCR
β-actin-R ACATCTGCTGGAAGGTGGACRT-qPCR

[i] MYO5A, myosin Va; F, forward; R, reverse; wt, wild-type; mut, mutant; MLPH, melanophilin; MITF, microphthalmia-associated transcription factor; TYR, tyrosinase; TYRP1, tyrosinase-related protein 1; TYRP2, tyrosinase-related protein 2; RT-qPCR, reverse transcription-quantitative polymerase chain reaction.

Melanocyte transfection

The mouse melanocytes used in the present study were established and maintained in our laboratory (13). The melanocytes were transfected with the pmirGLO-STTM-miR-143-5p plasmid and/or the pmirGLO null plasmid (NC) using the Lipofectamine 2000 assay (Invitrogen; Thermo Fisher Scientific, Inc.) following the manufacturer's instructions. The melanocytes were collected two days after, following transfection for cell lysis and total RNA preparation.

Dual luciferase reporter assay for miRNA target validation

293T cells were cultured in DMEM (Gibco; Thermo Fisher Scientific, Inc.) supplemented with 10% fetal bovine serum (FBS) and were transfected with 580 ng of pmirGLO-MYO5A-wt or pmirGLO-MYO5A-mut plasmids in the presence of 20 ng of pmirGLO-STTM-miR-143-5p or pmirGLO-NC plasmids using Lipofectamine 2000. These preparations were used for the luciferase assays two days after co-transfection. Luciferase activity was subsequently measured using the Dual-Luciferase Reporter Assay kit (Promega Corporation). The firefly luciferase activity of each test sample was normalized to that of Renilla. The data were performed in triplicate and expressed as the mean relative luciferase activity (mean ± SD).

Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) analysis of miRNA and mRNA expression levels

Total RNA from melanocytes was extracted using TRIzol reagent (Invitrogen; Thermo Fisher Scientific, Inc.) following the manufacturer's instructions and treated with DNase I (Sigma-Aldrich; Merck KGaA). For quantitative mRNA expression analysis, 1 µg of total RNA was reverse-transcribed to cDNA using a cDNA synthesis kit (Takara Bio, Inc.) as described in the manufacturer's instructions. The samples were amplified by quantitative real time PCR using SYBR-Green PCR master mix (Takara Bio, Inc.). For quantitative miRNA expression analysis, cDNA was produced using a specific stem-loop RT primer pair, a common reverse primer (Table I) pair and a cDNA synthesis kit (Takara Bio, Inc.) according to a previously described method (14). SYBR-Green PCR master mix (Takara Bio, Inc.) was used for RT-qPCR reactions performed on a 7500 Fast Real-Time PCR™ system (Applied Biosystems Life Technologies; Thermo Fisher Scientific, Inc.). The relative expression levels of mRNA and miRNA were quantified using the quantification cycle (Cq) method (15) and the normalization was performed with regard to the amounts of β-actin and U6 mRNA, respectively.

Western blot analysis

The cell lysates from melanocytes were obtained using RIPA cell lysis reagent (Beyotime Institute of Biotechnology) and western blotting was conducted as previously described (16). The following primary antibodies were used: Anti-MYO5A (rabbit resource) at a 1:1,000 dilution (cat. no. 3402; RRID:AB_2148475; Cell Signaling Technology, Inc.), anti-MLPH (mouse resource) at a 1:1,000 dilution (cat. no. 66092-1-Ig; RRID:AB_11232039; ProteinTech Group), anti-RAB27A (mouse resource) at a 1:1,000 dilution (cat. no. ab55667; RRID:AB_945112), anti-MiTF (rabbit resource) at a 1:1,000 dilution (cat. no. ab20663; RRID:AB_470315), anti-TYR (rabbit resource) at a 1:1,000 dilution (cat. no. ab61294), anti-TYRP1 (rabbit resource) at a 1:1,000 dilution (cat. no. ab83774; RRID:AB_2211142), and anti-TYRP2 (rabbit resource) at a 1:1,000 dilution (cat. no. ab74073; AB_1524517; all from Abcam), and anti-GAPDH (rabbit resource) at a 1:10,000 dilution (cat. no. AP0063, Bioworld Technology, Inc.). Anti-rabbit IgG secondary antibodies (cat. no. CW0103) and anti-mouse IgG secondary antibodies (cat. no. CW0102) were commercially purchased. The immunoblots were exposed to develop the chemicals and subsequently scanned using a ChemiDOC™ XRS + imager (Bio-Rad Laboratories, Inc.). Protein expression was quantified from the band intensity which was assessed by densitometry using the Image-Pro Plus software (Olympus Corporation).

Spectrophotometric assay of melanin content

Following transfection, the harvested melanocytes were rinsed with phosphate-buffered saline (PBS). The spectrophotometric assay of the alkali-soluble melanin required melanocytes that were lysed with l ml of 1 M NaOH at 37°C. The cells were incubated for 1 h and the absorbance was measured at 475 nm spectrophotometrically. The determination of EM was achieved by melanocyte hydrolysis at 80°C in 30% hydroiodic acid and 30% hypophosphoric acid. Following cooling and the addition of 50% ethanol, the samples were centrifuged at 2,234 × g for 10 min in order to collect the insoluble eumelanic pigments that were subsequently solubilized at 80°C in hydrogen peroxide and sodium hydroxide. Following centrifugation at 10,700 × g for 1 min in a Sorvall Ultracentrifuge, the supernatant was obtained and its absorbance was measured at 350 nm. The concentration of PM was determined in transfected melanocytes that were solubilized in phosphate buffer (pH 10.5) and centrifuged at 10,700 × g for 10 min. The supernatant was obtained and the absorbance was recorded at 400 nm. The melanin contents were normalized to the total numbers of cells. All experiments were performed in triplicate.

Fontana-Masson staining

Following melanocytes transfection with STTM-miR-143-5p or pmirGLO null vector, the plasmids were washed thoroughly with PBS (pH 7.4) and the cells were fixed in 4% formaldehyde for 20 min. The cells were subsequently stained using Ammoniacal Silver solution from the Fontana-Masson stain kit (Abcam) at 55°C in the dark for 1 h, and washed with distilled water thoroughly thereafter. The cells were further stained using 0.2% gold chloride solution and 5% sodium thiosulfate solution for 2 min and counter-stained with Nuclear Fast Red solution for 5 min. The samples were washed with distilled water following every staining process. The melanin content was visualized under a light microscope.

Statistical analysis

The difference in melanin production, the levels of miRNA, mRNA and protein, and the relative luciferase activities were analyzed using ANOVA and the protected Fisher's least significant difference tests. The analysis was conducted using SPSS 11.5 software (SPSS, Inc.) and the differences were determined using a P-value threshold of 0.05 (P<0.05).

Results

STTM-miR-143 reduces the levels of miR-143 and its binding to MYO5A in melanocytes

To evaluate whether STTM-miR-143-5p affected miR-143 activity, the expression levels of miR-143 and its predicted target gene MYO5A were investigated in melanocytes transfected with pmirGLO-miR-143 by RT-qPCR. The results indicated that miR-143 expression was significantly decreased and that MYO5A expression was significantly increased following STTM-miR-143-5p treatment (Fig. 1).

To determine whether binding to conserved target sites could cause a reduction in the expression levels of MYO5A (Fig. 2A and B), the plasmids containing the 3′-UTR of MYO5A were co-transfected into melanocytes with pmirGLO-STTM-miR-143 or the corresponding pmirGLO null vector. Co-transfection of the pmirGLO-STTM-miR-143 and the pmirGLO-MYO5A-wt plasmids or of the empty vector and the pmirGLO-MYO5A-wt plasmids into the cells indicated that pmirGLO-STTM-miR-143 significantly increased the luciferase activity of wild-type of MYO5A. Furthermore, luciferase reporter assays indicated that point mutations in the sequences of pmirGLO-MYO5A-mut abolished the effects of endogenous miR-143 by reducing complementarity between miR-143 and the target sites of MYO5A (Fig. 2C and D). These data indicated that miR-143 could bind to the 3′-UTR of MYO5A and significantly inhibit its expression.

Effect of STTM-miR-143 overexpression on the melanogenic gene expression

The melanocytes that were transfected with the pmirGLO-STTM-miR-143 and negative control plasmids were harvested in order to examine the levels of the melanogenic genes, namely TYR, TYRP1 and TYRP2. In addition, the levels of the transcription factor MITF, and of the melanin transport genes MLPH, and Rab27a were examined. RT-qPCR and western blotting analyses demonstrated that overexpression of pmirGLO-STTM-miR-143 in melanocytes significantly increased the mRNA and protein levels of MLPH, Rab27a, MITF, TYRP1 and TYR. Conversely, overexpression of pmirGLO-STTM-miR-143 in melanocytes significantly decreased the mRNA and protein levels of Tyrp2 (Fig. 3).

Effects of STTM-miR-143 overexpression on melanin production

To determine whether pmirGLO-STTM-miR-143 overexpression could affect melanin production, melanocytes transfected with pmirGLO-STTM-miR-143 plasmid were harvested and total alkali-soluble melanogenesis (ASM), pheomelanogenesis (PM), and eumelanogenesis (EM) were measured. The results indicated that pmirGLO-STTM-miR-143 overexpression in mouse melanocytes increased ASM and PM by 30% (P<0.01; Fig. 4A and C), while it decreased EM by approximately 20% (P<0.01; Fig. 4B). Fontana-Masson staining confirmed the localization of melanin in the melanocytes. Overexpression of the pmirGLO-STTM-miR-143-5p plasmids in melanocytes significantly increased the melanin content and distribution compared with those noted in the negative control (Fig. 4D).

Discussion

Genomic analysis has been previously used to investigate several aspects of pigment cell biology, including melanocyte- and melanosome-associated functions, pigment disorders, normal pigmentation variation and even melanoma (17). miRNAs are regulators of cellular events, such as differentiation, proliferation, and reprogramming (18), and have often been implicated in the regulation of melanogenesis for the determination of hair color (19). Our previous study identified miR-143 as a negative regulator of proliferation, migration and melanogenesis in mouse melanocytes by direct targeting of the TGF-β-activated kinase 1 (TAK1) (20). However, the effects of miR-143 knockdown on melanogenesis have not been previously identified. STTM is a powerful technology used to block miRNA function in animals (12). Our previous studies utilized STTM technology in order to inhibit miRNA-508-3p and demonstrated its efficacy in upregulating melanogenesis (21). In the present study, the same methodology was used to inhibit miR-143 expression in melanocytes.

Melanocytes located in the skin are derived directly from the neural crest cells and the embryonic cells that are present in the skin by the dorsolateral migration pathway (22). They are under the modulation of intrinsic factors and are controlled by extracellular signals (22). miR-143 plays a key role in embryonic stem cell (ESC) pluripotency (23), by targeting the sex-determining region Y-box 2 (SOX2), the Krüppel-like factor 4 (KLF4), and the octamer binding transcription factor 4 (OCT4) (20). These functions indicate that miR-143 promotes ESC differentiation into different cell lineages, such as neural crest cells (20). In mammalian skin, melanocytes produce melanin and form mature melanosomes that complete their pigmentation through their transfer to adjacent keratinocytes. These structures can also grow hair shafts at the hair bulb following transportation from the Golgi region to the dendrite tips (24,25). Melanocytes respond to environmental stimuli from surrounding keratinocytes to control differentiation and pigmentation, thereby determining hair and skin colors (26).

MITF is one of the key regulators of melanogenesis-limiting enzymes of the tyrosinase family, which include TYR, TYRP1, and TYRP2/DCT (27), The expression of MITF is modulated at the transcriptional level by specific transcription factors or at the post-transcriptional level by miRNAs (28). miR-143-5p can regulate MITF levels by targeting TAK1 (20). In the present study, it was demonstrated that MITF was upregulated in the presence of STTM-miR-143 in mouse melanocytes. MITF functions via a ‘lineage addiction’ mechanism to control specific aspects of the phenotypic expression of the melanocytic lineage and facilitate the transition of cells to a non-invasive stage. TYR and TYRP1 levels were decreased following miR-143 knockdown by STTM. However, DCT levels were increased following STTM-miR-143 overexpression. Therefore, it was hypothesized that MITF was not the only transcription factor involved in the regulation of TYRP2. In addition, the data were in agreement with those from a similar study demonstrating that TYR and TYRP1 levels were markedly decreased (27). The present study further demonstrated that TYRP2 expression was increased in MITF-knockdown melanocytes (MITF-KD) (27). Furthermore, TYRP2 expression levels were not regulated by the content of cellular melanin or by the levels of other regulatory enzymes in the melanogenic pathway (29). The mechanism of TYRP2 regulation has not been investigated to date. However, although MITF has been reported to be essential, it is not sufficient to induce the expression of melanogenic enzymes (30). In addition, it is a critical suppressor of innate immunity and can cause innate immune dysregulation of pigmentation, with implications in vitiligo, which is an autoimmune depigmentation disease (31).

During melanin transportation, melanosomes are transported across actin filaments via the association of the motor protein myosin Va with RAB27a and MLPH (32). RAB27a is a member of the Rab family of small GTPases, which are important regulators of membrane transport (33). Myosin Va requires simultaneous interaction with multiple components of a complex containing RAB27a and MLPH on the melanosomes (34). The C-terminus of MLPH can directly interact with actin, which is important for proper transportation and distribution of the melanosome to the dendrite tips (35). A positive correlation has been noted between the ability of MLPH to recruit MYO5A to melanosomes and the promotion of melanosomes in the peripheral retention (25). The accumulation of the pigment around the nucleus of the melanocytes and the abnormal transfer of melanin from melanocyte dendrites to keratinocytes can lead to albinism (36). miR-143 has been revealed to target MYO5A, and the present study demonstrated that STTM-miR-143 increased MYO5A levels and consequently MLPH and Rab27a levels, thus suggesting a stable interaction among MLPH, Rab27a and MYO5A. The absence of any one of these components may result in the failure of MYO5A to bind to melanosomes (34). In summary, STTM-miR-143 is an artificial biological tool used to control the melanogenesis by decreasing the expression of miR-143. This process regulates the levels of MYO5A, and in turn affects melanin secretion in melanocytes or in melanoma cells.

Acknowledgements

Not applicable.

Funding

The present study was supported by The Shanxi Scholarship Council of China (2017–072) and The Young Sanjin Scholars Distinguished Professor Program (RF).

Availability of data and materials

All data generated or analyzed during this study are included in this published article.

Authors' contributions

SQ and BL performed plasmid construction, cell culture and transfection, and gene expression experiments. JZ and XL performed melanin production, and analyzed and interpreted the data. CD and RF contributed to the conception and design of the experiments, and critically revised the manuscript for important intellectual content. SQ contributed to drafting the manuscript. All authors have read and approved the final manuscript and agree to be accountable for all aspects of the research in ensuring that the accuracy or integrity of any part of the work are appropriately investigated and resolved.

Ethics approval and consent to participate

Not applicable.

Patient consent for publication

Not applicable.

Competing interests

The authors declare that they have no competing interests.

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September 2019
Volume 20 Issue 3

Print ISSN: 1791-2997
Online ISSN:1791-3004

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APA
Qi, S., Liu, B., Zhang, J., Liu, X., Dong , C., & Fan, R. (2019). Knockdown of microRNA‑143‑5p by STTM technology affects eumelanin and pheomelanin production in melanocytes. Molecular Medicine Reports, 20, 2649-2656. https://doi.org/10.3892/mmr.2019.10492
MLA
Qi, S., Liu, B., Zhang, J., Liu, X., Dong , C., Fan, R."Knockdown of microRNA‑143‑5p by STTM technology affects eumelanin and pheomelanin production in melanocytes". Molecular Medicine Reports 20.3 (2019): 2649-2656.
Chicago
Qi, S., Liu, B., Zhang, J., Liu, X., Dong , C., Fan, R."Knockdown of microRNA‑143‑5p by STTM technology affects eumelanin and pheomelanin production in melanocytes". Molecular Medicine Reports 20, no. 3 (2019): 2649-2656. https://doi.org/10.3892/mmr.2019.10492