Knockdown of SNHG15 suppresses renal cell carcinoma proliferation and EMT by regulating the NF-κB signaling pathway
- Yang Du
- Chuize Kong
- Yuyan Zhu
- Meng Yu
- Zeliang Li
- Jianbin Bi
- Zhenhua Li
- Xiankui Liu
- Zhe Zhang
- Xiuyue Yu
- Published online on: May 4, 2018 https://doi.org/10.3892/ijo.2018.4395
- Pages: 384-394
Renal cell carcinoma (RCC) is one of the most common malignancies of the urological system, which leads to ~100,000 cases of mortality each year (1). Each year in China, per 1,000 new cases of cancer, 66.8 cases are caused by RCC; and per 1,000 cases of cancer-associated mortality, 23.4 cases are caused by RCC (2). Due to the lack of obvious clinical symptoms in the early stages of RCC, once diagnosed it may already have metastasized to other organs. Tumorigenesis and metastasis of RCC are extremely complex, not only with regards to genetic mutations, but also in the imbalance between tumor suppressor and activation pathways (3). At present, there are no available molecular biomarkers for RCC; therefore, the identification of more specific, effective biomarkers and therapeutic targets for RCC is required.
Long noncoding RNAs (lncRNAs) are >200 nt non-coding transcripts (4). It has been reported that lncRNAs have important roles in cellular development, differentiation, and numerous other biological, physiological and pathological processes (5). Previous studies have revealed that aberrant expression of lncRNAs is involved in tumorigenesis and progression (6,7). For example, HOX transcript antisense RNA (HOTAIR) has been reported to be involved in various types of cancer. HOTAIR recruits the poly-comb repressive complex 2 and lysine-specific histone demethylase 1A, thus leading to hypermethylation of histone H3 lysine 27 and ectopic expression of oncogenes (8). In addition, metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) may facilitate an aggressive phenotype via the enhancer of zeste homolog 2 pathway, and may interact with microRNA (miR)-205 in RCC (9). Conversely, downregulation of MALAT1 leads to a decrease in the expression levels of epithelial-mesenchymal transition (EMT)-associated genes, including including zinc finger E-box-binding homeobox (ZEB)1, ZEB2 and Slug, and an increase in cadherin 1 (10,11). Functional lncRNAs can be used for cancer diagnosis and the determination of prognosis, and may be considered potential therapeutic targets (12). Small nucleolar RNA host gene 15 (SNHG15) is a long intergenic noncoding RNA, which is located on chromosome 7p13 and yields an 837 bp transcript. Ectopic expression of SNHG15 promotes cell proliferation and invasion, partly by regulating matrix metalloproteinase (MMP)2 and MMP9 expression (13). However, the function of SNHG15 in RCC, as well as its regulatory mechanism, remains to be elucidated.
The present study demonstrated that SNHG15 expression was upregulated in RCC tissues and cell lines. Furthermore, knockdown of SNHG15 expression using small interfering (si)RNA inhibited cell proliferation, invasion and migration, and promoted apoptosis. The results indicated that SNHG15 may promote cell EMT by modulating the nuclear factor (NF)-κB pathway.
Materials and methods
The human RCC cell lines ACHN, OSRC-2, 786-O, 769-P and CAKI-1, and the normal kidney proximal tubule epithelial cell line HK-2 were obtained from the Chinese Academy of Sciences, Type Culture Collection Cell Bank (Shanghai, China). 769-P, 786-O and OSRC-2 cells were cultured in RPMI-1640 medium (HyClone; GE Healthcare, Logan, UT, USA); ACHN cells were cultured in minimal essential medium with Earle's balanced salts (HyClone; GE Healthcare); CAKI-1 cells were cultured in McCoy's 5A medium (Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA); and HK-2 cells were cultured in Dulbecco's modified Eagle's medium/F12 (HyClone; GE Healthcare). All media were supplemented with 10% fetal bovine serum (FBS; Biological Industries, Beit-Haemek, Israel), 100 U/ml penicillin and 100 mg/ml streptomycin (TBD Science, Tianjin, China). Cells were cultured at 37°C in an atmosphere containing 5% CO2.
Tissue samples and clinical data collection
The present study obtained tumor and adjacent normal tissue samples from 96 patients who were diagnosed with RCC and underwent surgical resection at the First Affiliated Hospital of Chinese Medical University (Shenyang, China) between February and July 2017. The present study was approved by the Ethics Committee on Human Research of the First Affiliated Hospital of Chinese Medical University, and written informed consent was obtained from all patients. The collected tissue samples were stored at −80°C prior to use.
RNA preparation and reverse transcription-quantitative polymerase chain reaction (RT-qPCR)
Total RNA was extracted from clinical samples and cultured cells using RNAiso Plus (Takara Biotechnology Co., Ltd., Dalian, China). Total RNA was quantified using a BioDrop Duo UV/VIS spectrophotometer (BioDrop Ltd., Cambridge, UK); only samples with an optical density A260/A280 ratio close to 2.0 were subsequently analyzed. According to the manufacturer's protocol, cDNA was synthesized using PrimeScript™ RT Master Mix, and qPCR was performed using SYBR Premix Ex Taq™ (both from Takara Biotechnology Co., Ltd.). The assay was performed using a LightCycler™ 480 II system (Roche Diagnostics, Basel, Switzerland) as follows: 50°C for 2 min, 95°C for 10 min, 45 cycles at 95°C for 10 sec, 60°C for 30 sec and 72°C for 45 sec. After 45 cycles, a melting curve was obtained by increasing the temperature from 40 to 97°C at a rate of 0.4°C/sec under continuous fluorescence monitoring. All data were normalized to the expression of β-actin. The relative expression levels were evaluated using the 2−ΔΔCq method (14). The primer sequences used to detect target genes and the internal reference gene were as follows (5′-3′): β-actin, forward, catgtacgttgctatccaggc and reverse, ctccttaatgtcacgcacgat; and SNHG15, forward, gcaccttaattgagcaagt and reverse, ttcattcaggagataccagaa.
786-O cells and ACNH cells were seeded in 6-well plates at a density of 400,000 cells/well, and were transfected with two effective SNHG15 siRNAs (Shanghai GenePharma Co., Ltd., Shanghai, China) at a concentration of 100 nM, using Lipofectamine® 3000 transfection reagent (Invitrogen; Thermo Fisher Scientific, Inc.), for 72 h at 37°C, according to the manufacturer's protocol. The culture medium was replaced 6 h post-transfection. The siRNA and negative control (NC) siRNA sequences used were as follows (5′-3′): siRNA-1, sense, GCAGUCUUUGUCCAUGAAATT and anti-sense, UCAUGGACAAAGACUGCTT; siRNA-2, sense, GCAGCAAUCCCAAGAUGCUTT and antisense, AGCAUCUUGGGAUUGCUGCTT; and NC, sense, UUCUCCGAACGUGUC ACGUTT and antisense, ACGUGACACGUUCGGAGAATT.
A total of 72 h post-transfection, cells were washed twice with ice-cold PBS, and lysed on ice in 10X (wt/vol) radioimmunoprecipitation assay lysis buffer containing 1 mM phenylmethylsulfonyl fluoride (Beyotime Institute of Biotechnology, Shenzhen, China). The lysate was then centrifuged at 13,400 × g for 30 min at 4°C. The supernatant was collected and stored at −80°C. The concentration of protein samples was measured using a bicinchoninic acid assay (Beyotime Institute of Biotechnology). After denaturation, equal amounts of protein (30 µg/lane) were separated by 10% SDS-PAGE and transferred to polyvinylidene fluoride membranes (EMD Millipore, Billerica, MA, USA). Nonspecific binding was blocked with 5% bovine serum albumin (BSA; Beijing Solarbio Science & Technology Co., Ltd., Beijing, China) in Tris-buffered saline containing 0.1% Tween-20 (TBST), and primary antibodies were applied to the membranes overnight at 4°C in 5% BSA with TBST. Monoclonal primary antibodies were specific to Snail (1:1,000, 3879), Slug (1:1,000, 9585), Vimentin (1:1,000, 5741), E-cadherin (1:1,000, 14472), N-cadherin (1:1,000, 13116) and Histone H3 (1:2,000, 4499) (all from Cell Signaling Technology, Inc., Danvers, MA, USA), ZEB1 (1:500, BA2871-2; Wuhan Boster Biological Technology, Ltd., Wuhan, China), β-actin (1:5,000, A1978), GAPDH (1:5,000, G9545) (both from Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) and NF-κB1 (p50) (1:1,000, 14220-1-AP; Wuhan Sanying Biotechnology, Wuhan, China). After washing three times with TBST for 10 min per wash, the membranes were incubated for 2 h at 37°C with rabbit immunoglobulin G secondary antibodies (1:5,000, ZB-2301 and ZB-2305; OriGene Technologies, Inc., Beijing, China). The proteins were detected using an EasySee® Western Blot kit (Beijing Transgen Biotech Co., Ltd., Beijing, China), according to the manufacturer's protocol. The densitometric values were calculated using ImageJ version 1.50i software (National Institutes of Health, Bethesda, MD, USA).
Cell proliferation assay
Cells were seeded in 96-well plates at a density of 2×103 cells/well and were transfected with SNHG15 NC siRNAs for 72 h in situ. The Cell Counting Kit-8 (CCK-8) assay (Dojindo Molecular Technologies, Inc., Shanghai, China) was used to assess proliferative potential, according to the manufacturer's protocol. The absorbance was measured at 450 nm every 24 h using a plate reader (Model 680; Bio-Rad Laboratories, Inc., Watford, UK). Three replicates were tested for each time-point and each assay was repeated at least three times.
Cell proliferation was also evaluated using a Cell-Light 5-ethynyl-2′-deoxyuridine (EdU) DNA cell proliferation kit (Guangzhou RiboBio Co., Ltd., Guangzhou, China). EdU was added to the culture medium at a concentration of 40 µM for 12 h at 37°C. Following fixation in 4% paraformaldehyde for 30 min at room temperature and treatment with 0.5% Triton-X for 30 min at 37°C, cells were incubated for 1 h with Apollo reaction cocktail in a dark room at room temperature. Prior to observation under a fluorescence microscope, nuclei were stained with Hoechst 33342. The exposure time for visualization of Apollo was 28 sec, and that for nuclei was 175 msec.
Cell cycle analysis and cell apoptosis assay
Cell apoptosis was examined using flow cytometry. The cells were seeded, transfected for 72 h, and collected from a 6-well plate and washed with ice-cold PBS and resuspended with binding buffer at a density of 1×106/ml. The cells were then stained with fluorescein isothiocyanate (FITC) Annexin V and propidium iodide (PI) (BD Pharmingen™ Annexin V/FITC apoptosis kits; BD Biosciences, San Jose, CA, USA). Flow cytometric analysis was performed using a FACSCalibur flow cytometer equipped with CellQuest version 6.0 software (both from BD Biosciences).
For cell cycle analysis, cells were dissociated, collected and washed with PBS and then fixed in ice-cold 75% ethanol. PI/RNase staining buffer (BD Biosciences) was added, and the cells at a density of 1×106/ml were incubated in the dark for 20 min at room temperature. Cell cycle analysis was performed with a FACSCalibur flow cytometer (BD Biosciences) and data were analyzed by ModFit LT version 4.0.5 (Verity Software House, Inc., Topsham, ME, USA). Each experiment was performed in triplicate.
For cell invasion assays, Transwell chambers with 8-µm pores coated with Matrigel (BD Biosciences) were inserted into a 24-well plate (Costar; Corning Incorporated, Corning, NY, USA), whereas for the migration assays, Transwell chambers without Matrigel were used. Post-transfection with SNHG15 and NC siRNAs for 72 h, cells were trypsinized and resuspended in RPMI-1640 containing 1% FBS. Subsequently, 0.2 ml cell suspension (1×104/ml) was added to the upper chamber, and 0.6 ml RPMI-1640 containing 10% FBS was added to the lower chamber. After incubation for 24 h at 37°C, the cells remaining in the upper chamber were removed using cotton swabs, and those that had migrated to the lower side were fixed with 4% paraformaldehyde for 10 min, and stained with 1.0% crystal violet for 10 min at room temperature. Images were captured using an EVOS™ XL Core Imaging system (Invitrogen; Thermo Fisher Scientific, Inc.).
Nuclear extracts were obtained using the Nuclear Extraction kit (Abcam, Cambridge, MA, USA). Post-transfection for 72 h, cells were washed with ice-cold PBS, and incubated in pre-extraction buffer on ice for 10 min. Subsequently, extracts were collected and centrifuged at 13,400 × g for 1 min. The supernatants containing cytoplasmic protein were collected and 10 µl extraction buffer was added to the pellet, which was mixed and incubated on ice for 15 min. The nuclear extracts in the supernatants were collected following centrifugation at 13,400 × g for 15 min at 4°C. The cytoplasmic and nuclear protein extracts were used for subsequent western blotting.
Tumor necrosis factor (TNF)-α treatment
TNF-α (Sino Biological, Inc., Beijing, China) was reconstituted at 10 µg/µl with PBS. Post-transfection for 72 h, cells were cultured with serum-free medium for 12 h. TNF-α solution was diluted in serum-free medium to a concentration of 50 ng/ml and added to the culture flasks. PBS (1X) solution, at the same volume as TNF-α, was used to treat the control group, and was also diluted in serum-free medium. Subsequently, the treatment and control groups were cultured at 37°C.
Immunofluorescence images were captured under an inverted fluorescence microscope (Olympus Corporation, Tokyo, Japan). Cells were seeded in 24-well plates at a density of 6×104/per well and were transfected with SNHG15 and NC siRNAs for 72 h, after which the cells were cultured with serum-free medium for 12 h at 37°C and treated with 50 ng/ml TNF-α for 6 h at 37°C. Subsequently, cells were fixed with 4% paraformaldehyde for 30 min at room temperature, permeabilized in 0.2% Triton X-100 for 30 min at 37°C and blocked with 5% BSA for 30 min at 37°C. Cells were then incubated with a rabbit polyclonal antibody against NF-κB1 (1:200, 14220-1-AP; Wuhan Sanying Biotechnology) in blocking buffer overnight. Subsequently, cells were warmed at 37°C for 1 h, and were incubated with Alexa Fluor® 488-conjugated antibody (1:500, ZF-0511; OriGene Technologies, Inc.) at 37°C for 1 h in the dark. Prior to visualization, the nuclei were stained with DAPI (Beyotime Institute of Biotechnology).
lncRNA expression data were derived from the The Atlas of Noncoding RNAs in Cancer (TANRIC) database (http://ibl.mdanderson.org/tanric/_design/basic/index.html), which provides easy access to publicly available RNA-Seq data for lncRNA expression, based on The Cancer Genome Atlas (TCGA) data portal. According to the TANRIC RCC database, lncRNA expression was analyzed for 612 patients (67 normal tissue samples and 545 RCC tissue samples). lncRNA expression values were obtained as log2 reads per kilobase per million mapped reads (RPMK) from the TANRIC database, and the median expression was calculated for benign and tumor samples, and is visualized in boxplots.
Due to the lack of prognostic information in the aforementioned TANRIC database, Kaplan-Meier curves were obtained from another TCGA database tool (http://www.oncolnc.org/) using the Kidney Renal Clear Cell Carcinoma database. The lower percentile was set as 10, and the upper as 90; Kaplan-Meier analysis was performed based on these data. Log-rank (Mantel-Cox text) was used to compare the difference between the high and low expression groups.
Data were also obtained from the publicly available Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/). The GSE53757 dataset was used (15); probe, 225699_at. GEO2R (https://www.ncbi.nlm.nih.gov/geo/geo2r/) was used to compare the tumor group with the normal group.
The possibility of protein and lncRNA binding was predicted using the AnnoLnc website (http://annolnc.cbi.pku. edu.cn/). The full sequence of SNHG15 was typed in fasta format and the potential proteins that bind with SNHG15 were listed. Subsequently, the probability of these interactions was confirmed using the bioinformatics website, RPISeq (http://pridb.gdcb.iastate.edu/RPISeq/index.html); the two calculated values [prediction using Random Forest (RF) classifier, 0.75; prediction using Support Vector Machine (SVM) classifier, 0.59] indicated high binding potency. RPISeq predictions were based on RF and SVM classifiers. The interaction probabilities generated by RPISeq range between 0 and 1; in performance evaluation experiments, predictions with probabilities >0.5 are considered 'positive', thus indicating that the corresponding RNA and protein are likely to interact.
Two-tailed t-test was used for analysis of data obtained from the TANRIC database, and paired sample t-test was used for analysis of data from the GEO database. The association between T stage and SNHG15 expression was calculated by Fisher's exact test, whereas the association between other clinical characteristics and SNHG15 expression was assessed by the χ2 test. One-way analysis of variance followed by Dunnett's multiple comparisons tests or Turkey's multiple comparisons tests were used to compare differences among multiple groups and to compare SNHG15 expression in various RCC cell lines. P<0.01 was considered to indicate a statistically significant difference. The results of assays repeated in triplicate are presented as the means ± standard deviation, unless otherwise stated. Statistical analyses were performed using the Statistical Package for the Social Sciences software package 21.0 (SPSS 21.0; IBM Corporation, Armonk, NY, USA).
SNHG15 is upregulated in RCC tissues and cell lines
SNHG15 expression in 67 normal tissue samples and 545 RCC tissue samples was obtained from the TANRIC database. SNHG15 was significantly upregulated in RCC tissues (log2 RPMK=3.278) compared with in the normal tissues (log2 RPMK=1.261; P<0.01; Fig. 1A). Subsequently, the prognostic information for patients with RCC was collected from the OncoLnc website, and patients were categorized into high and low expression groups, based on median SNHG15 expression. The number of patients in the low expression group was 52, whereas that in the high expression group was 470. The results of a Kaplan-Meier analysis revealed that patients with higher SNHG15 expression had poorer survival tendency (P<0.01; Fig. 1B). In addition, SNHG15 expression was analyzed using a GEO dataset (GSE53757). Among the microarray data (15), the expression levels of SNHG15 were upregulated in RCC (P<0.01; Fig. 1C). Furthermore, the expression levels of SNHG15 were detected in 96 paired RCC and adjacent normal tissue samples obtained from the First Hospital of China Medical University, using RT-qPCR. The tumor/adjacent normal tissue expression values were calculated, and samples were categorized into two groups according to the cut-off point (1.0). The number of patients with high SNHG15 expression was larger than those with low expression (Fig. 2A). As shown in Table I, clinical characteristics were analyzed in the high and low SNHG15 expression groups, which were divided according to the median value of SNHG15 relative expression. The patients with expression higher than the median value were included in the high expression group, whereas the patients with expression lower than the median value were included in the low expression group. The high expression group exhibited reduced differentiation and advanced T stage compared with in the low expression group. The number of cases with lymphatic invasion or metastasis was too small to provide meaningful statistical results. Furthermore, SNHG15 expression was measured in RCC cell lines: ACHN, CAKI-1, OSRC-2, 769-P and 786-O cells, and in the normal renal cell line HK-2. There was a significant increase in the expression of SNHG15 in ACHN, CAKI-1, OSRC-2, 769-P and 786-O cells compared with in the HK-2 cells (P<0.01; Fig. 2B). The ACHN and 786-O cell lines exhibited the highest expression; therefore, these two cell lines were used for subsequent experimentation.
Differential expression of SNHG15 between RCC tissues and adjacent normal tissues from TCGA and GEO databases. (A) Expression of SNHG15 in RCC tumor tissues and adjacent normal tissues from TCGA database. (B) Kaplan-Meier overall survival curve analysis of patients with RCC; high expression and low expression groups were generated using a cut-off value of 1 (log2). (C) Expression of SNHG15 in RCC tumor tissues and adjacent normal tissues from the GEO database. *P<0.01. GEO, Gene Expression Omnibus; RCC, renal cell carcinoma; SNHG15, small nucleolar RNA host gene 15; TCGA, The Cancer Genome Atlas.
Expression levels of SNHG15 in RCC tissues and cell lines. (A) Relative expression of SNHG15 in RCC tumor tissues and adjacent normal tissues from 96 patients with RCC. (B) Relative expression of SNHG15 in RCC line (ACHN, 769-p, 786-O, OSRC-2 and CAKI-1) and the normal human renal cortex/proximal tubule epithelial cell line (HK-2), as analyzed by reverse transcription-quantitative polymerase chain reaction. *P<0.01. RCC, renal cell carcinoma; SNHG15, small nucleolar RNA host gene 15.
Association between SNHG15 expression and the clinical characteristics of patients with renal cell carcinoma.
SNHG15 exerts a significant effect on RCC proliferation
The present study detected high SNHG15 expression in RCC; therefore, subsequent experiments were conducted in order to analyze its biological function. SNHG15 was upregulated in ACHN and 786-O cells; therefore, these cells were selected as the experimental cell lines. The knockdown effects of siRNAs targeting SNHG15 in RCC cells were confirmed through RT-qPCR (P<0.01; Fig. 3A). CCK-8 assays were also conducted to detect the effects of SNHG15 on cell proliferation. The results indicated that the proliferation of ACHN and 786-O cells was significantly inhibited following transfection with SNHG15 siRNAs (P<0.01; Fig. 3B) compared with in the NC groups. Furthermore, the number of red-stained cells in the SNHG15 siRNA groups following EdU proliferation assays was reduced compared with in the NC groups (Fig. 3C). To investigate whether cell apoptosis was affected by SNHG15, flow cytometric analysis was conducted. The results demonstrated that the proportion of apoptotic cells was significantly increased in the SNHG15 knockdown groups compared with in the NC groups (P<0.01; Fig. 3D). In addition, the effects of SNHG15 on cell cycle progression were examined by flow cytometric analysis. An increased accumulation of cells was detected in the G0/G1 phase, with a concomitant decrease in the number of cells in the S phase, post-transfection with SNHG15 siRNAs (P<0.01; Fig. 3E). These results indicated that SNHG15 may promote the proliferation of RCC cells.
Effects of SNHG15 on RCC cell proliferation, apoptosis and cell cycle progression. (A) Reverse transcription-quantitative polymerase chain reaction analysis was conducted to detect SNHG15 expression in ACHN and 786-O cells post-transfection with NC and SNHG15 siRNAs. *P<0.01. (B) Cell counting kit-8 assays were conducted to investigate the proliferation of cells transfected with siRNAs. *P<0.01. (C) Proliferative capability of siRNA-transfected cells was evaluated using EdU staining immunofluorescence assays. (D) Flow cytometric detection of apoptosis by Annexin V-fluorescein isothiocyanate staining in cells transfected with siRNAs. *P<0.01. (E) Cell cycle analysis of siRNA-transfected cells by flow cytometry. *P<0.01. EdU, 5-ethynyl-2′-deoxyuridine; NC, negative control; OD, optical density; RCC, renal cell carcinoma; siRNA, small interfering RNA; SNHG15, small nucleolar RNA host gene 15.
SNHG15 promotes RCC migration and invasion in vitro
Under a ×10 optical microscope, the morphology of SNHG15 knockdown cells was revealed to be markedly different from that of NC cells. To distinguish between the two cell lines, which possessed similar morphology, different color balances were used. SNHG15 siRNA-transfected ACHN cells exhibited diamond and polygon morphology, and cells were no longer long and fusiform in shape, whereas SNHG15 siRNA-transfected 786-O cells exhibited ellipse-shaped and ovoid morphology, and no longer possessed long and narrow fusiform morphology (Fig. 4A). These findings indicated that SNHG15 may contribute to the invasion and migration of RCC cells; therefore, these cells were assessed using Transwell assays. For ACHN and 786-O cell lines, the number of invaded cells was reduced in the knockdown groups compared with in the NC groups (P<0.01; Fig. 4B). The migration assay exhibited similar results. These data suggested that SNHG15 may enhance invasion and migration of RCC cells. To examine the mechanism underlying the effects of SNHG15 on invasion and migration, the present study investigated EMT in RCC. The expression levels of three EMT markers (E-cadherin, N-cadherin and Vimentin) were detected using western blotting. The results demonstrated that knockdown of SNHG15 decreased the expression levels of N-cadherin and Vimentin, and increased E-cadherin expression (P<0.01; Fig. 4C). These results indicated that SNHG15 may induce the EMT process, and mediate RCC invasion and migration.
SNHG15 promotes renal cell carcinoma migration and invasion. (A) Morphological alterations of SNHG15 knockdown cells, as detected under an optical microscope (magnification, ×10). (B) Transwell assays were used to determine the migration and invasion of ACHN and 786-O cells transfected with siRNAs (magnification, ×40). *P<0.01. (C) Expression levels of cell adhesion molecules (E-cadherin, N-cadherin and Vimentin), as detected in 786-O and ACHN cells. *P<0.01. NC, negative control; siRNA, small interfering RNA; SNHG15, small nucleolar RNA host gene 15.
SNHG15 regulates EMT via the NF-κB signaling pathway
To explore how SNHG15 contributes to EMT in RCC, the expression levels of transcription factors associated with EMT were detected. Western blotting was used to detect the expression of Snail1, Slug and ZEB1 in RCC; the expression levels of these three proteins were decreased in cells transfected with SNHG15 siRNA (P<0.01; Fig. 5A). These results suggested that Snail1, Slug and ZEB1 may be positively regulated by SNHG15 in RCC. Subsequently, bioinformatics data (http://annolnc.cbi.pku.edu.cn/) were analyzed, which indicated that NF-κB1 response elements could specifically bind SNHG15. In addition, NF-κB is able to induce the expression of Snail1, Slug and ZEB1, and promote the EMT process (16–18). Therefore, it was hypothesized that SNHG15 may affect the NF-κB signaling pathway in RCC. Using western blotting, the total expression of p50 was detected in RCC cells post-transfection with SNHG15 and NC siRNAs; however, there were no differences detected between the SNHG15 and NC groups (P>0.05; Fig. 5A). These findings indicated that knockdown of SNHG15 may not affect p50 expression. Subsequently, the present study investigated whether SNHG15 may affect NF-κB transportation to the nucleus. To analyze this, 786-O and ACHN cells were transfected with siRNA for 72 h and the nuclear/cytoplasmic expression of NF-κB was measured. NF-κB nuclear expression was reduced in the SNHG15 siRNA groups, whereas NF-κB cytoplasmic expression was slightly increased (P<0.01; Fig. 5B). In addition, the expression levels of EMT markers were examined (P<0.01; Fig. 5C); the expression levels of N-cadherin and Vimentin were markedly increased under TNF-α stimulation, and were decreased in the SNHG15 siRNA groups. TNF-α, as the activator of NF-κB, may promote the EMT process; therefore, TNF-α stimulation was used to confirm whether knockdown of SNHG15 might weaken the pro-EMT function of NF-κB. Furthermore, an immunofluorescence assay was performed to further confirm whether SNHG15 may affect the NF-κB signaling pathway. The results demonstrated that, in spite of TNF-α stimulation, the nuclear fluorescence intensity of NF-κB was reduced in the SNHG15 siRNA groups compared with in the NC groups (P<0.01; Fig. 5D). In addition, Transwell assays were conducted to detect migration and invasion under TNF-α stimulation. The results indicated that stimulation with TNF-α strengthened RCC migration and invasion; however, knockdown of SNHG15 was able to weaken this influence (P<0.01; Fig. 5E). In conclusion, SNHG15 may regulate the NF-κB signaling pathway, in order to promote migration and invasion.
Knockdown of SNHG15 affects NF-κB entry into the nucleus. (A) Knockdown of SNHG15 reduced the protein expression levels of EMT-associated transcription factors (Snail1, Slug and ZEB1). However, there was no difference in the total protein expression levels of NF-κB between the SNHG15 siRNA and NC groups.*P<0.01; nsP>0.05. (B) Nuclear/cytoplasmic NF-κB expression in ACHN and 786-O cells transfected with siRNAs. *P<0.01. (C) Following stimulation with TNF-α for 6 h, EMT markers were examined among the various groups. *P<0.01. (D) Nuclear immunofluorescence intensity of NF-κB was reduced in the SNHG15 siRNA groups compared with in the NC groups. (E) Cell migration and invasion were altered among the various groups following TNF-α stimulation and siRNA transfection (magnification, ×40). *P<0.01. EMT, epithelial-mesenchymal transition; NC, negative control; NF-κB, nuclear factor-κB; siRNA, small interfering RNA; SNHG15, small nucleolar RNA host gene 15; TNF-α, tumor necrosis factor-α; ZEB1, zinc finger E-box-binding homeobox 1.
It has been reported that dysregulation of lncRNAs is closely associated with the development and progression of cancer (19). The present study revealed that SNHG15 may act as an onco-lncRNA in RCC, and the results revealed that it may be involved in the NF-κB signaling pathway, by inducing nuclear translocation of NF-κB. To the best of our knowledge, the present study is the first to demonstrate the biological function of SNHG15 in RCC.
The lncRNA-SNHG family has been associated with tumorigenesis, metastasis and other cell functions. SNHG7 promotes lung cancer cell proliferation, migration and invasion, and inhibits apoptosis by enhancing Fas apoptotic inhibitory molecule 2 expression (20). Based on bioinformatics analysis, SNHG8 has been suggested as a potential biomarker and drug target candidate for gastric cancer, and is associated with Epstein-Barr virus (21). SNHG16 is regulated by the Wnt pathway in colorectal cancer and serves a role as a competing endogenous (ce)RNA in lipid metabolism. Knockdown of SNHG16 results in increased apoptosis and impaired migration (22). Furthermore, SNHG16 expression has been reported to be frequently increased in breast cancer tissues and to significantly promote breast cancer cell migration (23); SNHG16 exerts its effects by acting as a ceRNA, competitively binding miR-98 with E2F transcription factor 5 protein. SNHG14 increases the expression of phospholipase A2 group IVA via the inhibition of miR-145-5p, which may result in the activation of microglia in cerebral infarction (24). Under c-MYC-induced upregulation, SNHG12 regulates cell proliferation, apoptosis and migration in triple-negative breast cancer (25). Furthermore, SNHG15 expression is significantly upregulated in hepatocellular carcinoma and gastric cancer (13,26). Tani and Torimura reported that SNHG15 may become a surrogate indicator for the chemical stress response, and may enhance human cell susceptibility to death under various stressors (27). However, the biological function of SNHG15 in RCC remains unknown.
NF-κB serves important pathological roles in the development and progression of cancer (28); however, whether lncRNAs regulate its activation, or how lncRNAs and NF-κB interact with each other, remains under study. NF-κB-interacting lncRNA (NKILA), which is upregulated by NF-κB, has been identified to bind with NF-κB/IκB, and directly masks phosphorylation motifs of IκB, thereby inhibiting IκB kinase-induced IκB phosphorylation and NF-κB activation. Notably, NKILA is necessary to prevent NF-κB pathway overactivation in inflammation-stimulated breast epithelial cells (29). Furthermore, ectopic expression of HOTAIR mediates NF-κB activation during the DNA damage response; HOTAIR induces activation of NF-κB and prolongs NF-κB activation in recurrent platinum-resistant ovarian tumors (30).
NF-κB is a transcription factor, which can enter the nucleus and bind specific promoter sequences of EMT-associated proteins, including Snail and Slug, thus promoting migration and invasion (31,32). The present study analyzed TCGA and GEO datasets to compare the expression of SNHG15 in RCC and normal tissues, and revealed that SNHG15 was markedly upregulated in RCC. To confirm this finding, the expression levels of SNHG15 were detected in 96 pairs of RCC samples. Notably, the expression levels of SNHG15 were upregulated in tumor samples compared with in normal tissues. In addition, SNHG15 expression was increased in RCC cell lines compared with in the normal HK-2 cell line. A Kaplan-Meier analysis confirmed that patients with a higher SNHG15 level exhibited shorter overall survival compared with the lower expression group. To further investigate the function of SNHG15 in RCC, cell biological function assays were conducted following knockdown of SNHG15. The results demonstrated that silencing SNHG15 expression led to significant inhibition of cell proliferation, invasion and migration. Furthermore, EMT biomarkers were investigated in the SNHG15 siRNA and NC groups using western blotting. The protein expression levels of EMT markers were significantly downregulated in the SNHG15 siRNA groups. In addition, bioinformatics analysis indicated that NF-κB could specifically bind to SNHG15. Therefore, nuclear proteins were extracted and western blotting was performed. The findings indicated that knockdown of SNHG15 contributed to a decrease in NF-κB translocation to the nucleus. An immunofluorescence assay also confirmed that SNHG15 may regulate the NF-κB signaling pathway.
In conclusion, the expression levels of SNHG15 were increased in RCC tissues and cell lines. The present findings indicated that SNHG15 may regulate the proliferation, migration and invasion of RCC cells via regulation of the NF-κB signaling pathway. The findings of this study may have diagnostic and therapeutic implications; these data may improve understanding regarding RCC pathogenesis and progression, offer a novel insight into lncRNA interactions with proteins, and provide information regarding the biological and molecular functions of lncRNA.
The present study was supported by grants from the National Natural Science Foundation of China (grant no. 81672525), the Liaoning Nature Science Fund (grant no. 201602830), the Shenyang Plan Project of Science and Technology (grant no. 17-230-098), Liaoning Distinguished Professor [grant no. (2012)145], the Shenyang Clinical Medicine Research Center [grant no. (2017)76], the National Natural Science Foundation of China (grant no. 81672523) and the Doctoral Scientific Research Foundation of Liaoning Province (grant no. 20141038).
Availability of data and materials
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
YD designed and performed most of the experiments. YZ was involved in designing the bioinformatics analysis, and drafting and modifying the manuscript. ZZ participated in designing and performing the EdU proliferation and Transwell experiments. ZeL, JB, ZhL and XL collected tissue samples and clinical information of the 96 patients with RCC, and contributed to revision of the manuscript and figures. XY and MY conducted reverse transcription-quantitative polymerase chain reaction analyses to detect the relative expression levels of SNHG15 in 96 pairs of tumor/adjacent normal tissues, and statistically analyzed the differential expression of SNHG15 in tumor/adjacent normal tissues. CK acquired funding, established the urology laboratory, provided the required equipment and instruments, supervised the immunofluoresence assay, contributed to the critical reading of the manuscript, generated the figures, and gave final approval of the manuscript.
Ethics approval and consent to participate
The present study was approved by the Ethics Committee on Human Research of the First Affiliated Hospital of Chinese Medical University (Shenyang, China), and written informed consent was obtained from all patients.
Consent for publication
Written informed consent was obtained from all patients.
The authors declare that they have no competing interests.
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